Data Banks for Structural and Molecular Biology

 
 
 An important component of collecting structural information is to make it available for public use.  We are all indebted to the hundreds of scientist involveld worldwide in maintaining the structural and genomic Data Bases.
 
 
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The National Library of Medicine (NLM) National Center for Biotechnology Information: includes links to almost all other data bases
PubMed: a search engine for NLM Data Bases cn3D: NCBI Structure Browser
Internet Grateful Med: another search engine for the NLM Data Bases GenBank 
Medline MOOSE: Macromolecular Structure Query at the National Laboratory for Computational Science and Engineering
Entrez Search System MMDB: Molecular Modelling Database
Protein Data Bank Scoop: Structural Classification of Proteins
 PIR Protein Information Resource  CATH Christine Orengo's scheme for identifying and classifying protein  fold
 PEDANT Protein Extraction, Description, and ANalysis Tool  PredictProtein EMBL automatic service for predicting aspects of protein  structure
Genome DataBase: Hosted by The Johns Hopkins    University School of Medicine  secondary structure prediction using a logistic discriminant function  (NIH Laboratory of Structural Biology) 
 OWL server sequence searches   DALI Protein comparison by alignment of distance matrices (Holm & Sander, 1993
 BLOCKS Fred Hutchinson Cancer Research Center tools for verifying protein sequence homology  ProClass Database organized by family relationships (ProSite/PIR) 
 EC Enzyme database   CCDC (Cambridge Crystallographic Data Centre) This contains information relating to the Cambridge Structural Database (CSD) and associated software
 PUMA database of metabolic pathways cross-referenced  by phylogeny, sequence, and function  SWISS-MODEL Repository , a database for theoretical protein models.
 WIT (at MCS, Argonne National Laboratory)
 WIT mirror site (at MSU): PUMA's successor.  Create or examine metabolic reconstructions based on genomics studies
Citation Matcher: find an article
Structure/Sequence Searches: Washington University links to various data bases World Directory of Crystallographers
Journal Browser: brows all the electronic journals Heavy atom data bank
 
 
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